STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK12350.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)    
Predicted Functional Partners:
AMK11253.1
Cytochrome C biogenesis protein CcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.719
AMK12353.1
Cytochrome C biogenesis protein CcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.719
AMK11139.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.628
AMK09769.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.622
AMK10301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.593
AMK12351.1
Cytochrome C biogenesis protein CcmC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.587
AWY79_10985
Fatty acid hydroxylase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.558
AMK12349.1
Branched chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.456
AMK09912.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.444
AMK13047.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.441
Your Current Organism:
Pseudodesulfovibrio indicus
NCBI taxonomy Id: 1716143
Other names: DSM 101483, Desulfovibrio indicus, Desulfovibrio sp. J2, MCCC 1A01867, P. indicus, Pseudodesulfovibrio indicus Cao et al. 2016, strain J2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.