STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmHRibosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (325 aa)    
Predicted Functional Partners:
mraZ
Cell division protein MraZ; Belongs to the MraZ family.
  
 0.991
ftsL
Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
  
 0.962
pbpB
Penicillin-binding protein B.
 
  
 0.892
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
 
 
 0.861
rpsP
Hypothetical protein; BS17; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.832
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.820
ybeY
Endoribonuclease YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
 
   0.808
rpsO
Hypothetical protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
 
 
 0.805
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.798
spoVD
Sporulation-specific penicillin-binding protein.
 
  
 0.790
Your Current Organism:
Oceanobacillus picturae
NCBI taxonomy Id: 171693
Other names: DSM 14867, KCTC 3821, LMG 19492, LMG:19492, O. picturae, Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006, Virgibacillus picturae, Virgibacillus picturae Heyrman et al. 2003
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.