STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO03454.1Hypothetical protein. (281 aa)    
Predicted Functional Partners:
CDO03451.1
Putative membrane protein.
 
     0.952
ykoC
Putative HMP/thiamine permease protein YkoC.
 
     0.952
ykoD_2
Putative HMP/thiamine import ATP-binding protein YkoD.
 
     0.948
CDO03455.1
Pullulanase, extracellular.
 
     0.913
CDO02003.1
Putative membrane protein.
 
     0.761
CDO02501.1
Collagen triple helix repeat (20 copies).
    
 0.560
CDO03088.1
Hypothetical protein.
    
 0.560
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
 0.558
lytC_3
N-acetylmuramoyl-L-alanine amidase LytC precursor.
    
 0.558
CDO03102.1
Putative phage protein (possible DNA packaging).
  
 
  0.533
Your Current Organism:
Oceanobacillus picturae
NCBI taxonomy Id: 171693
Other names: DSM 14867, KCTC 3821, LMG 19492, LMG:19492, O. picturae, Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006, Virgibacillus picturae, Virgibacillus picturae Heyrman et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.