STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO04896.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
CDO04897.1
Fluoroquinolones export permease proteinc/MT2760.
 
 
  0.985
CDO04895.1
Fluoroquinolones export ATP-binding proteinc/MT2762.
 
 
  0.961
CDO04894.1
DNA-binding transcriptional repressor AcrR.
 
     0.939
CDO04898.1
Inhibitor of sigma-G Gin.
 
     0.574
CDO03953.1
Fluoroquinolones export ATP-binding proteinc/MT2762.
 
 
  0.453
bofA
Bypass-of-forespore protein A.
       0.432
CDO03091.1
Toxin secretion/phage lysis holin.
  
     0.404
Your Current Organism:
Oceanobacillus picturae
NCBI taxonomy Id: 171693
Other names: DSM 14867, KCTC 3821, LMG 19492, LMG:19492, O. picturae, Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006, Virgibacillus picturae, Virgibacillus picturae Heyrman et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.