STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytD_1Beta-N-acetylglucosaminidase precursor. (936 aa)    
Predicted Functional Partners:
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC precursor.
  
 
 0.807
lytC_3
N-acetylmuramoyl-L-alanine amidase LytC precursor.
  
 
 0.807
atl
AtlE.
 
 
 
0.795
CDO02100.1
CAAX amino terminal protease self-immunity.
  
 
   0.704
galE_3
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.671
CDO01712.1
CAAX prenyl protease-related protein.
    
   0.640
CDO02009.1
CAAX amino terminal protease self-immunity.
    
   0.640
CDO02595.1
CAAX amino terminal protease self-immunity.
    
   0.640
CDO04143.1
CAAX prenyl protease-related protein.
    
   0.640
yocH_2
Cell wall-binding protein YocH precursor.
   
  
 0.632
Your Current Organism:
Oceanobacillus picturae
NCBI taxonomy Id: 171693
Other names: DSM 14867, KCTC 3821, LMG 19492, LMG:19492, O. picturae, Oceanobacillus picturae (Heyrman et al. 2003) Lee et al. 2006, Virgibacillus picturae, Virgibacillus picturae Heyrman et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.