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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC61025.1Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)    
Predicted Functional Partners:
KIC59794.1
Protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.785
KIC59760.1
Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
  
  
 0.773
KIC56870.1
Class V aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.703
KIC56210.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 0.703
KIC60795.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.649
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.598
KIC56537.1
Carotenoid oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.533
KIC61024.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.522
KIC59820.1
Cytochrome C biogenesis protein CcmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.435
purD
Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family.
      
 0.414
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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