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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC60679.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)    
Predicted Functional Partners:
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.879
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.555
KIC54092.1
Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.485
KIC60942.1
Flavonol synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.475
KIC59229.1
Chemotaxis protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.469
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
   
   0.430
KIC56251.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.419
KIC59195.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.409
KIC56442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.409
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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