Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KIC60774.1Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)    
Predicted Functional Partners:
KIC60960.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
KIC60772.1
PA-phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
KIC60773.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
KIC57851.1
Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.512
KIC60739.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
KIC61075.1
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
KIC60482.1
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
KIC59224.1
Protein with SnoaL 3 domain, NTF 2 superfamily; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
KIC60771.1
Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
KIC60604.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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