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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC60824.1Haloacid dehalogenase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. (242 aa)    
Predicted Functional Partners:
KIC60826.1
Alpha,alpha-trehalose-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
KIC60825.1
Glucoamylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
KIC59738.1
RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.760
KIC59545.1
Glycosyl hydrolase family 65; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.655
KIC60822.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.638
KIC58650.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.633
KIC57581.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.633
KIC54128.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.633
KIC60768.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.600
KIC59076.1
2,5-didehydrogluconate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.600
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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