Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KIC60865.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (59 aa)    
Predicted Functional Partners:
KIC59721.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
    0.905
KIC56387.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.864
KIC56680.1
CsbD-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
  
    0.846
KIC60863.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.652
KIC60864.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.528
KIC60866.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
KIC60867.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.516
KIC60949.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.512
KIC59804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.512
KIC60868.1
Protein tyrosine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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