Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIC60921.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
KIC56849.1
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.543
KIC56190.1
OsmC family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.543
KIC53745.1
Ohr subfamily peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.543
KIC60922.1
Threonine dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
KIC60923.1
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
KIC60920.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
KIC59721.1
General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
   
    0.486
KIC60863.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.422
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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