Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KIC60427.1Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)    
Predicted Functional Partners:
KIC60426.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.966
KIC59084.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.787
KIC60653.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.654
KIC60428.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.630
KIC60429.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.595
KIC60336.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.566
KIC59085.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.566
KIC60430.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.542
KIC60999.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.454
KIC58923.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.435
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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