Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC60429.1ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
KIC60428.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.985
KIC60653.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.957
KIC60654.1
Thiamine biosynthesis protein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.932
KIC60430.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.868
KIC60427.1
Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.595
KIC60426.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.532
KIC60453.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
KIC56300.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
KIC59633.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
KIC56706.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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