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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC60502.1LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
KIC55716.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
KIC60663.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
KIC55732.1
Conjugal transfer protein TrbK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
KIC60507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
KIC55706.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
KIC59842.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.551
KIC60501.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
KIC60499.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
KIC60500.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.491
KIC60498.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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