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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC60513.1CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)    
Predicted Functional Partners:
KIC60662.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.932
KIC60514.1
Conjugal transfer protein TraG; Type IV secretion VirD4 coupling protein family; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.929
KIC59763.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.927
KIC58419.1
Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.927
KIC56863.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.927
KIC56869.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.927
KIC60510.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.869
KIC60508.1
Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.857
KIC60522.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
KIC60518.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.826
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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