Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Experiments
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[Homology]
Score
KIC60515.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)    
Predicted Functional Partners:
KIC60516.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.724
KIC60662.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.629
KIC60517.1
Peptidase S26; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.619
KIC60518.1
Glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.619
KIC60513.1
CopG family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.555
KIC60523.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.551
KIC60522.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.526
KIC60508.1
Conjugal transfer protein TrbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.525
KIC60503.1
Conjugal transfer protein TraI; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.498
KIC60519.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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