close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC60529.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (121 aa)    
Predicted Functional Partners:
KIC61065.1
Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.603
KIC60637.1
Agmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family.
    
 0.591
argD
Acetylornithine aminotransferase; Catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.553
KIC60337.1
N-carbamoylputrescine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.543
KIC58645.1
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.511
argH
Argininosuccinate lyase; Catalyzes the formation of arginine from (N-L-arginino)succinate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.496
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.492
KIC58198.1
Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.492
KIC56857.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.481
KIC58977.1
Arginine N-succinyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.480
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.