Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
KIC60664.1DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
KIC60532.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.941
KIC60531.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.867
KIC60665.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.844
KIC60535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.834
KIC55705.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.787
KIC55740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.787
ybeY
rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.767
KIC55709.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.753
KIC60523.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
KIC55707.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.697
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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