Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIC59668.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)    
Predicted Functional Partners:
KIC59669.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.938
KIC59670.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.819
KIC59673.1
Phage capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.811
KIC59663.1
Gene transfer agent (GTA); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
KIC59827.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.663
KIC59829.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.638
KIC59664.1
Glycoside hydrolase family 24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.635
KIC59828.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.633
KIC59667.1
Phage tail length tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.627
KIC59831.1
DNA-packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.615
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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