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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC59679.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (375 aa)    
Predicted Functional Partners:
KIC59825.1
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.876
KIC56871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.876
KIC59830.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.855
KIC59678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
KIC59672.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.574
KIC58082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.485
KIC58991.1
Regulatory protein FlaEY; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.453
KIC55882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.453
KIC54105.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.453
KIC59831.1
DNA-packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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