Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC59679.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (375 aa)    
Predicted Functional Partners:
KIC59830.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.795
KIC59825.1
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.706
KIC56871.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.706
KIC59678.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.596
KIC58082.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.516
KIC59672.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.511
KIC59700.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.458
KIC59831.1
DNA-packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.450
KIC56765.1
uroporphyrin-III methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
     
 0.435
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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