Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIC59435.1Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)    
Predicted Functional Partners:
KIC59434.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
KIC56052.1
Type I secretion protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.766
KIC55760.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.712
KIC59629.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
KIC57831.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
KIC56710.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
KIC59433.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
KIC59084.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.490
KIC59436.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.422
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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