Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC59286.1poly(R)-hydroxyalkanoic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)    
Predicted Functional Partners:
KIC60927.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.981
KIC56741.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.951
KIC59784.1
acetoacetyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.949
KIC60776.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.937
KIC58613.1
Polyhydroxyalkonate synthesis repressor PhaR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.859
KIC59258.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
KIC56276.1
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.665
KIC56906.1
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.565
KIC59260.1
Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
KIC56021.1
Phasin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.477
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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