STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIC58883.1Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (610 aa)    
Predicted Functional Partners:
KIC58884.1
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
KIC57851.1
Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.733
KIC59077.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.653
KIC58885.1
Modulator protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
KIC58886.1
Inositol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
KIC60644.1
Aminoacyl peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
KIC58882.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiD family.
       0.572
KIC59102.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
KIC58881.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
KIC59076.1
2,5-didehydrogluconate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.541
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.