| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KIC56024.1 | KIC58604.1 | RM53_13545 | RM53_08035 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.426 |
| KIC56024.1 | KIC59032.1 | RM53_13545 | RM53_07585 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.938 |
| KIC56024.1 | topA | RM53_13545 | RM53_14040 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.416 |
| KIC58604.1 | KIC56024.1 | RM53_08035 | RM53_13545 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.426 |
| KIC58604.1 | KIC59032.1 | RM53_08035 | RM53_07585 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.954 |
| KIC58604.1 | gyrB | RM53_08035 | RM53_09825 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.426 |
| KIC58604.1 | parE | RM53_08035 | RM53_13300 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.426 |
| KIC58604.1 | rnhB | RM53_08035 | RM53_06990 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.783 |
| KIC58604.1 | topA | RM53_08035 | RM53_14040 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.996 |
| KIC59031.1 | KIC59032.1 | RM53_07580 | RM53_07585 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
| KIC59031.1 | rlmJ | RM53_07580 | RM53_07575 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.548 |
| KIC59032.1 | KIC56024.1 | RM53_07585 | RM53_13545 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.938 |
| KIC59032.1 | KIC58604.1 | RM53_07585 | RM53_08035 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.954 |
| KIC59032.1 | KIC59031.1 | RM53_07585 | RM53_07580 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.773 |
| KIC59032.1 | KIC60437.1 | RM53_07585 | RM53_02995 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.660 |
| KIC59032.1 | gyrB | RM53_07585 | RM53_09825 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.938 |
| KIC59032.1 | ku | RM53_07585 | RM53_03000 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA ligase; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.541 |
| KIC59032.1 | parE | RM53_07585 | RM53_13300 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.938 |
| KIC59032.1 | rlmJ | RM53_07585 | RM53_07575 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA. | 0.548 |
| KIC59032.1 | rnhB | RM53_07585 | RM53_06990 | DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.906 |