Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC58421.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1250 aa)    
Predicted Functional Partners:
KIC56684.1
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.737
KIC55749.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.737
KIC58604.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.735
KIC56213.1
Competence protein TfoX; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.710
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.670
KIC53172.1
Crystallin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.617
KIC55920.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.567
acsA
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
    
 0.522
KIC60682.1
WD-40 repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.510
KIC55834.1
tipN; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.510
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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