Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIC57600.1Sigma-70 protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)    
Predicted Functional Partners:
KIC59761.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.883
KIC60578.1
PAS fold family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.842
KIC59832.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.842
KIC58818.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.842
KIC58852.1
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.842
KIC60343.1
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.759
KIC59790.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.759
KIC58933.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.759
KIC57576.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.759
KIC57165.1
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.759
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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