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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC57180.1DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)    
Predicted Functional Partners:
KIC57179.1
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
KIC60617.1
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.918
KIC59212.1
DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.915
KIC57178.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.614
KIC57177.1
Flagellar hook protein FlgK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
       0.578
KIC57181.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
KIC57182.1
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.452
KIC57183.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.424
KIC58628.1
Glycoprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
KIC57184.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.418
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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