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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC56872.1Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)    
Predicted Functional Partners:
KIC60897.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.808
KIC60898.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
KIC56396.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0262 family.
  
     0.643
hpf
Ribose-phosphate pyrophosphokinase; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.632
KIC60566.1
Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
   
    0.600
KIC59246.1
Ubiquinol-cytochrome C chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
KIC56920.1
Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
KIC56906.1
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.538
KIC58832.1
Small protein containing a coiled-coil domain containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
KIC57570.1
Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.521
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.