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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC56731.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)    
Predicted Functional Partners:
KIC56732.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
KIC56730.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.995
KIC58965.1
Squalene/phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.975
KIC56729.1
Beta-carotene ketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
KIC56774.1
Beta-carotene hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.717
ubiA
4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.605
KIC60618.1
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.593
KIC61033.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.589
KIC60600.1
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
    
 0.522
KIC58210.1
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.520
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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