Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC56416.1Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)    
Predicted Functional Partners:
fliE
Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.814
KIC56390.1
Surface presentation of antigens (spoa) protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.804
KIC59748.1
Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
KIC59688.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KIC58991.1
Regulatory protein FlaEY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.755
KIC57193.1
Flagellar assembly regulator FliX; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
KIC56696.1
Flagellar basal body P-ring biosynthesis protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.749
KIC57178.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.746
KIC56673.1
Flagellar assembly protein FlbE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.745
KIC56776.1
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.743
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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