Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KIC56364.1Peptidase A24; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (254 aa)    
Predicted Functional Partners:
KIC55955.1
DNA processing protein DprA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.846
KIC56363.1
Iron transporter FeoB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.682
KIC56362.1
Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.661
KIC54091.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.618
KIC53932.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.618
KIC56259.1
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.601
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.533
KIC58918.1
Chromosome segregation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
   
    0.532
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.522
KIC56837.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.486
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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