Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC56406.1Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)    
Predicted Functional Partners:
KIC56407.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KIC56545.1
Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
KIC57851.1
Peptidase M1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.551
KIC56544.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
KIC61021.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.543
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
       0.537
KIC56427.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.459
KIC58883.1
Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
KIC60740.1
Asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.400
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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