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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC56290.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)    
Predicted Functional Partners:
ftsH
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
   
 0.995
KIC56291.1
Nodulation protein NfeD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.956
KIC56752.1
Peptidase S54; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.910
KIC55799.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uridine kinase family.
    
  0.761
KIC55807.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.754
KIC60739.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.664
KIC59852.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.664
KIC57000.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.664
KIC56748.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M16 family.
   
 0.664
KIC56292.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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