rnhA protein (Brevundimonas nasdae) - STRING interaction network

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Score

rnhA

Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (150 aa)

Predicted Functional Partners:

rnhB

0.920

dnaQ

0.917

polA

0.866

KIC58988.1

0.865

KIC55884.1

0.864

dnaX

0.607

topA

0.588

KIC59847.1

0.581

KIC61059.1

0.576

tatA

0.570

Your Current Organism:

Brevundimonas nasdae

NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIC55884.1	dnaX	RM53_14300	RM53_02295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.953
KIC55884.1	polA	RM53_14300	RM53_10580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.573
KIC55884.1	rnhA	RM53_14300	RM53_13375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.864
KIC55884.1	topA	RM53_14300	RM53_14040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.814
KIC58988.1	dnaX	RM53_07330	RM53_02295	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.961
KIC58988.1	polA	RM53_07330	RM53_10580	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.736
KIC58988.1	rnhA	RM53_07330	RM53_13375	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.865
KIC58988.1	topA	RM53_07330	RM53_14040	Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.853
KIC59847.1	rnhA	RM53_04895	RM53_13375	Flagellar basal-body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.581
KIC61059.1	dnaQ	RM53_00295	RM53_10775	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	0.932
KIC61059.1	dnaX	RM53_00295	RM53_02295	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.997
KIC61059.1	polA	RM53_00295	RM53_10580	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.972
KIC61059.1	rnhA	RM53_00295	RM53_13375	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.576
KIC61059.1	rnhB	RM53_00295	RM53_06990	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.416
KIC61059.1	topA	RM53_00295	RM53_14040	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.861
dnaQ	KIC61059.1	RM53_10775	RM53_00295	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
dnaQ	dnaX	RM53_10775	RM53_02295	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.995
dnaQ	polA	RM53_10775	RM53_10580	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.633
dnaQ	rnhA	RM53_10775	RM53_13375	DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.	Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.917
dnaX	KIC55884.1	RM53_02295	RM53_14300	DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953