Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC55933.1N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)    
Predicted Functional Partners:
KIC58642.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.871
KIC56752.1
Peptidase S54; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.785
KIC56923.1
Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.775
KIC55934.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
KIC58833.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.587
KIC58919.1
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
KIC56191.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.496
KIC58920.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.443
KIC61042.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.437
nnrD
Carbohydrate kinase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
 
   
 0.431
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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