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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC55983.1Metal ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (628 aa)    
Predicted Functional Partners:
KIC59079.1
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.889
KIC59070.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.884
KIC61124.1
Sodium:proton antiporter; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
    
 0.608
KIC58438.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.608
KIC58095.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.608
KIC56775.1
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.608
KIC55971.1
hfsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.608
KIC55938.1
Mechanosensitive ion channel protein MscS; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.566
KIC55939.1
Threonine aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
   
 0.509
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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