Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KIC55968.1Sel1 repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)    
Predicted Functional Partners:
KIC59847.1
Flagellar basal-body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.
    
 
 0.772
KIC56416.1
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.727
KIC56356.1
Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.714
KIC59748.1
Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.710
KIC60975.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
KIC60873.1
Pilus assembly protein CpaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
KIC60876.1
Pilus assembly protein CpaD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.691
KIC60870.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.681
KIC60877.1
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.669
KIC56652.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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