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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC55789.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)    
Predicted Functional Partners:
KIC55788.1
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.872
KIC55787.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.687
KIC55790.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
KIC56874.1
Preprotein translocase subunit Tim44; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
KIC59787.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
KIC58247.1
Disulfide bond formation protein DsbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.523
KIC56828.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
KIC60597.1
Cell division protein ZapA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.453
KIC55935.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
KIC58785.1
Colicin V production CvpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.429
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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