Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC55836.1Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)    
Predicted Functional Partners:
KIC61048.1
SNARE-like domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.776
KIC55837.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.754
ispDF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
     
 0.537
KIC55849.1
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
KIC61117.1
Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.520
KIC57867.1
Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.520
KIC55835.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
KIC58657.1
Diacylglycerol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.515
KIC59054.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
 0.452
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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