Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KIC55758.1Peptidase; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. (692 aa)    
Predicted Functional Partners:
KIC55757.1
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
KIC58236.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
KIC58235.1
Prolyl oligopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
KIC55755.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
KIC55756.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
KIC58195.1
Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.520
KIC59097.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.515
KIC59023.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.506
KIC61021.1
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
KIC58622.1
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.491
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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