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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC55749.1Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
KIC58210.1
Amine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.967
KIC60682.1
WD-40 repeat-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.820
KIC55799.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the uridine kinase family.
    
  0.803
KIC55834.1
tipN; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.793
KIC55753.1
Phosphoesterase HXTX; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
KIC58844.1
3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.751
KIC60661.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
KIC60498.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
KIC56989.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
KIC59667.1
Phage tail length tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.646
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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