Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC55701.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1174 aa)    
Predicted Functional Partners:
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 0.927
KIC60510.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.820
KIC55729.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.820
KIC59202.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.819
KIC55702.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.813
KIC55704.1
Single-stranded DNA endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
KIC55881.1
Conjugal transfer protein TrbD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.782
KIC56540.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.773
KIC55706.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.749
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.742
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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