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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC55173.1Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
KIC58837.1
rpsU-divergently transcribed protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.933
KIC55174.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
fixJ-2
Response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
KIC55808.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.507
KIC55752.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.422
KIC59046.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.419
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.419
KIC55852.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.419
KIC53930.1
NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.419
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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