STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC55173.1Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
KIC58837.1
rpsU-divergently transcribed protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.855
KIC56549.1
2-polyprenylphenol hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.650
KIC59046.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.643
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
  0.643
KIC53930.1
NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.643
KIC55752.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.549
KIC55852.1
Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.547
KIC55174.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.525
fixJ-2
Response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
KIC56902.1
2-octaprenyl-6-methoxyphenyl hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.473
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.