STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC54105.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
KIC56901.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.779
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.728
KIC60860.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.698
KIC59045.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.698
KIC60695.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.536
KIC59014.1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.536
KIC60993.1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.490
KIC60803.1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.490
KIC60764.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.478
KIC60604.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.478
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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