Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KIC53961.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)    
Predicted Functional Partners:
KIC58828.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.733
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.713
nadK
Inorganic polyphosphate kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
     0.565
KIC59787.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
KIC56540.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.549
KIC56828.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.533
KIC61101.1
Stringent starvation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
KIC56759.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
atpF-2
ATP synthase F0 subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.488
KIC56874.1
Preprotein translocase subunit Tim44; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.436
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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