Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
KIC53920.1Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)    
Predicted Functional Partners:
KIC53919.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.945
KIC53921.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.668
KIC53922.1
Mn-containing catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.664
KIC55172.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
KIC55130.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.558
KIC59032.1
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.527
KIC53938.1
G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.487
KIC56891.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
KIC57022.1
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.437
KIC59056.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.418
Your Current Organism:
Brevundimonas nasdae
NCBI taxonomy Id: 172043
Other names: B. nasdae, Brevundimonas nasdae Li et al. 2004, DSM 14572, JCM 11415, strain W1-2B
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