STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001891165_00677Unannotated protein. (243 aa)    
Predicted Functional Partners:
GCA_001891165_00676
Unannotated protein.
 0.999
GCA_001891165_00754
Unannotated protein.
   
  0.912
GCA_001891165_00654
Unannotated protein.
 
   
 0.874
GCA_001891165_00143
Unannotated protein.
    
 0.871
GCA_001891165_00122
Unannotated protein.
 
 
 
0.857
GCA_001891165_01267
Unannotated protein.
     
 0.846
GCA_001891165_01166
Unannotated protein.
  
 
  0.813
GCA_001891165_00252
Unannotated protein.
    
 0.811
GCA_001891165_00653
Unannotated protein.
  
  
 
0.767
GCA_001891165_00251
Unannotated protein.
    
 0.759
Your Current Organism:
Streptobacillus ratti
NCBI taxonomy Id: 1720557
Other names: DSM 101843, JCM 31098, S. ratti, Streptobacillus ratti Eisenberg et al. 2016, Streptobacillus sp. OGS16, strain OGS16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.