STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001891165_01208Unannotated protein. (870 aa)    
Predicted Functional Partners:
GCA_001891165_01209
Unannotated protein.
 0.999
GCA_001891165_01203
Unannotated protein.
  
  
 0.890
GCA_001891165_01204
Unannotated protein.
  
  
 0.855
GCA_001891165_01206
Unannotated protein.
  
    0.774
GCA_001891165_01207
Unannotated protein.
       0.766
GCA_001891165_01202
Unannotated protein.
       0.755
GCA_001891165_01205
Unannotated protein.
       0.753
GCA_001891165_00100
Unannotated protein.
  
  
 0.713
GCA_001891165_00021
Unannotated protein.
  
 
 0.649
GCA_001891165_00315
Unannotated protein.
 
  
 0.630
Your Current Organism:
Streptobacillus ratti
NCBI taxonomy Id: 1720557
Other names: DSM 101843, JCM 31098, S. ratti, Streptobacillus ratti Eisenberg et al. 2016, Streptobacillus sp. OGS16, strain OGS16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.