Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ATK06_1894 | ATK06_1895 | GCA_001044175_00540 | GCA_001044175_00541 | Unannotated protein. | Unannotated protein. | 0.760 |
ATK06_1894 | ATK06_1896 | GCA_001044175_00540 | GCA_001044175_00542 | Unannotated protein. | Unannotated protein. | 0.705 |
ATK06_1894 | ATK06_1897 | GCA_001044175_00540 | GCA_001044175_00543 | Unannotated protein. | Unannotated protein; May be involved in recombinational repair of damaged DNA. | 0.664 |
ATK06_1894 | xerD | GCA_001044175_00540 | GCA_001044175_00539 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.913 |
ATK06_1895 | ATK06_1894 | GCA_001044175_00541 | GCA_001044175_00540 | Unannotated protein. | Unannotated protein. | 0.760 |
ATK06_1895 | ATK06_1896 | GCA_001044175_00541 | GCA_001044175_00542 | Unannotated protein. | Unannotated protein. | 0.970 |
ATK06_1895 | ATK06_1897 | GCA_001044175_00541 | GCA_001044175_00543 | Unannotated protein. | Unannotated protein; May be involved in recombinational repair of damaged DNA. | 0.708 |
ATK06_1895 | xerD | GCA_001044175_00541 | GCA_001044175_00539 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.762 |
ATK06_1896 | ATK06_1894 | GCA_001044175_00542 | GCA_001044175_00540 | Unannotated protein. | Unannotated protein. | 0.705 |
ATK06_1896 | ATK06_1895 | GCA_001044175_00542 | GCA_001044175_00541 | Unannotated protein. | Unannotated protein. | 0.970 |
ATK06_1896 | ATK06_1897 | GCA_001044175_00542 | GCA_001044175_00543 | Unannotated protein. | Unannotated protein; May be involved in recombinational repair of damaged DNA. | 0.799 |
ATK06_1896 | xerD | GCA_001044175_00542 | GCA_001044175_00539 | Unannotated protein. | Unannotated protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.705 |
ATK06_1897 | ATK06_1894 | GCA_001044175_00543 | GCA_001044175_00540 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein. | 0.664 |
ATK06_1897 | ATK06_1895 | GCA_001044175_00543 | GCA_001044175_00541 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein. | 0.708 |
ATK06_1897 | ATK06_1896 | GCA_001044175_00543 | GCA_001044175_00542 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein. | 0.799 |
ATK06_1897 | GCA_001044175_00544 | GCA_001044175_00543 | GCA_001044175_00544 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein. | 0.976 |
ATK06_1897 | lexA | GCA_001044175_00543 | GCA_001044175_01013 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.578 |
ATK06_1897 | polA | GCA_001044175_00543 | GCA_001044175_01486 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.539 |
ATK06_1897 | recA | GCA_001044175_00543 | GCA_001044175_01030 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.732 |
ATK06_1897 | ruvA | GCA_001044175_00543 | GCA_001044175_00955 | Unannotated protein; May be involved in recombinational repair of damaged DNA. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.546 |
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