Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B4V02_03580 | B4V02_06555 | GCA_001705305_05496 | GCA_001705305_00765 | Unannotated protein. | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.566 |
B4V02_03580 | alaS | GCA_001705305_05496 | GCA_001705305_00767 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.905 |
B4V02_03580 | gltX | GCA_001705305_05496 | GCA_001705305_02263 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.456 |
B4V02_03580 | metG | GCA_001705305_05496 | GCA_001705305_03978 | Unannotated protein. | Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.807 |
B4V02_03580 | pheT | GCA_001705305_05496 | GCA_001705305_00127 | Unannotated protein. | Unannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.790 |
B4V02_03580 | thrS | GCA_001705305_05496 | GCA_001705305_00384 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). | 0.612 |
B4V02_03580 | valS | GCA_001705305_05496 | GCA_001705305_04333 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.779 |
B4V02_06550 | B4V02_06555 | GCA_001705305_00766 | GCA_001705305_00765 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.974 |
B4V02_06550 | B4V02_06560 | GCA_001705305_00766 | GCA_001705305_00764 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein; Belongs to the UPF0473 family. | 0.945 |
B4V02_06550 | B4V02_06565 | GCA_001705305_00766 | GCA_001705305_00763 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein. | 0.929 |
B4V02_06550 | alaS | GCA_001705305_00766 | GCA_001705305_00767 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.782 |
B4V02_06555 | B4V02_03580 | GCA_001705305_00765 | GCA_001705305_05496 | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Unannotated protein. | 0.566 |
B4V02_06555 | B4V02_06550 | GCA_001705305_00765 | GCA_001705305_00766 | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Unannotated protein; Belongs to the UPF0297 family. | 0.974 |
B4V02_06555 | B4V02_06560 | GCA_001705305_00765 | GCA_001705305_00764 | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Unannotated protein; Belongs to the UPF0473 family. | 0.960 |
B4V02_06555 | B4V02_06565 | GCA_001705305_00765 | GCA_001705305_00763 | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Unannotated protein. | 0.936 |
B4V02_06555 | alaS | GCA_001705305_00765 | GCA_001705305_00767 | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.901 |
B4V02_06560 | B4V02_06550 | GCA_001705305_00764 | GCA_001705305_00766 | Unannotated protein; Belongs to the UPF0473 family. | Unannotated protein; Belongs to the UPF0297 family. | 0.945 |
B4V02_06560 | B4V02_06555 | GCA_001705305_00764 | GCA_001705305_00765 | Unannotated protein; Belongs to the UPF0473 family. | Unannotated protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.960 |
B4V02_06560 | B4V02_06565 | GCA_001705305_00764 | GCA_001705305_00763 | Unannotated protein; Belongs to the UPF0473 family. | Unannotated protein. | 0.870 |
B4V02_06560 | alaS | GCA_001705305_00764 | GCA_001705305_00767 | Unannotated protein; Belongs to the UPF0473 family. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.752 |
page 1 of 4